Ok, in reply to Lotesdelere's request to do further troubleshooting, these are the changes I made after making every single change that was suggested in the post with the exception of the output audio module setting:
I rechecked the box entitled Enable Time-Stretching Audio. Nothing happened.
I unchecked the box to enable the graphic equalizer. Nothing happened, and I was also able to take my volume to 200 percent as well.
I took file caching down to 1000. Nothing happened. Took it down to 500. Nothing happened. Without knowing what the default was
(I found out later was 300), I took it again down to 0. The problem returned.
So I took it back up to 1000, and the problem went away.
I took the FFmpeg threads down from 4 to 2. Nothing happened. Took them again down to 1. Again, nothing happened. Again to 0, nothing happened.
I took the SRC resampler rate to the default Sinc function (fast). Nothing happened.
Also, I re-enabled the graphic equalizer, and was still able to keep my volume at 200%
So obviously none of the settings had any effect at taking care of my issues except changing the audio output module to Win32 waveout extension,
and checking the box Use S/PDIF out when available. Also, changing the file cache to 1000ms. These settings are the only two that helped get rid of the problems. Everything else had no effect. The output module took care of the rattling speakers, and the file caching took care of the audio
sync issue.
Once again, I'm using Windows 7 Professional 64-bit for my OS, and these changes are for VLC 2.0.2 Twoflower.
These are my system specs:
AMD Phenom 965 X4 BE
Asus Crosshair III
Nvidia GeForce GTX 460 Superclocked
Corsair 850W PSU
8GB of Mushkin Blackline 1600MHz DDR3 RAM
Windows 7 Professional 64-bit in a dual boot with Ubuntu 12.04 LTS